Chief executive officer John Mulder manages Bendigo Health and reports to the board of directors. He is supported by eight executive directors who oversee the running of ten service streams between them.

• Chief medical officer
  Executive director medical services
  Dr Andre Nel;
• Chief financial officer
  Andrew Collins;
• Executive director psychiatric services 
  Dr Phil Tune;
• Chief information officer
  Executive director of information services
  Bruce Winzar;
• Executive director community and continuing care
  Liz Hamilton;
• Executive director new Bendigo hospital project 
  David Walker;
• Executive director of nursing
  Executive director surgical services
  Peter Faulkner;
• Acting executive director human resources 
  Andrea Noonan